International journals

Submitted

  1. •M. Sassi, Y. Augagneur, J. Bronsard, G. Pascreau, M. Emily, P.-Y. Donnio, M. Revest, T. Wirth and Brice Felden - S. aureus infection forecasts powered by a broad genomic-transcriptomic survey


Under review

  1. •F. Hebert, D. Causeur and M. Emily. Global Testing Approach for Gene-Based Gene-Gene Interaction

  2. •F. Hebert, D. Causeur and M. Emily. Adaptive Handling of Dependence in Regression Modeling


2022

  1. 1.S. Mira, M. Emily, C. Mougel, M. Ourry and E. Le Cadre, A field indicator for rhizosphere effect monitoring in arable soils - Plant and Soil

2021

  1. 2.P.-Y. de Mullenheim, L. Rouvière, M. Emily, S. Chaudru, A. Kaladji, G. Mahé, A. Le Faucheur, (2021) Should I stay or should I go now?" Recovery time effect on walking capacity in symptomatic peripheral artery disease - Accepted in Journal of Applied Physiology

  2. 3.G. Ménard, A. Rouillon, G. Ghukasyan, M. Emily, B. Felden, P.-Y. Donnio, (2021) Galleria mellonella larvae as a robust infection model to investigate sRNA-mediated pathogenesis in Staphylococcus aureus - Accepted in Frontiers Cellular and Infection Microbiology

  3. 4.A. Taoum, S. Chaudru, P.-Y. de Müllenheim, F. Congnard, M. Emily, B. Noury-Desvaux, S. Bickert, G. Carrault, G. Mahé, A. Le Faucheur, (2021) Comparison of activity monitors accuracy to assess intermittent outdoor walking - Accepted in Medicine & Science in Sports & Exercice

  4. 5.F. Hébert, D. Causeur and M. Emily (2021), An adaptive decorrelation procedure for signal detection, Computational Statistics & Data Analysis, Vol. 153.

2020

  1. 6.M. Emily, N. Sounac, F. Kroell and M. Houée-Bigot (2020), Gene-based methods to detect gene-gene interaction in R: the GeneGeneInteR package, Journal of Statistical Software, Vol. 95, No. 12, pages 1-32.

2019

  1. 7.A. Deglaire, S. De Oliveira, J. Jardin, V. Briard-Bion, F. Kroell, M. Emily, O. Ménarda, C. Bourlieu, D. Dupont (2019) Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic digestion at the preterm newborn stage, Vol. 281, pages 294-303.

2018

  1. 8.M Emily and C. Friguet (2018) A Mutual Information-based method to select informative pairs of variables in case-control genetic association studies to improve the power of detecting interaction between genetic variants, Journal de la Société Française de Statistique, Vol. 159, No. 2, pages 84-110.

  2. 9. M Emily (2018) A survey of statistical methods for gene-gene interaction in case-control genome-wide association studies, Journal de la Société Française de Statistique Vol. 159, No. 1, pages 27-67.

  3. 10.Y. Gaffary, F. Argelaguet Sanz, M. Marchal, A. Girard, F. Gosselin, M. Emily, A. Lécuyer (2018) Toward Haptic Communication: Tactile Alphabets Based on Fingertip Skin Stretch, IEEE Transactions on Haptics.

  4. 11.P.-Y. de Müllenheim, S. Chaudru, M. Emily, M. Gernigon, G. Mahé, S. Bickert, J. Prioux, B. Noury-Desvaux and A. Le Faucheur (2018), Using GPS, accelerometry and heart rate to predict outdoor graded walking energy expenditure, Journal of Science and Medicine in Sport, Vol. 21, No. 2, pages 166-172.

  5. 12.M. Emily (2018), Power comparison of Cochran-Armitage Test of Trend against allelic and genotypic tests in case-control genetic association studies, Statistical Methods in Medical Research, Vol. 27, No. 9, pages 2657-2673

2017

  1. 13.M. Emily and C. Friguet. (2017) Power evaluation of asymptotic tests for comparing two binomial proportions to detect direct and indirect association in large-scale studies, Statistical Methods in Medical Research, Vol. 26, No. 6, pages 2780-2799.

2016

  1. 14.A. Deglaire, S. de Oliveira, J. Jardin, V. Briard-Bion, M. Emily, O. Ménard, C. Bourlieu and D. Dupont (2016) Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic term newborn digestion, Accepted in Electrophoresis.

  2. 15.M. Emily, C. Hitte and A. Mom (2016) SMILE: a novel Dissimilarity-based Procedure for Detecting Sparse-Specific Profiles in Sparse Contingency Tables, Computational Statistics and Data Analysis, Vol. 99, pages 171-188.

  3. 16.M. Emily (2016) AGGrEGATOr: A Gene-based GEne-Gene interActTiOn test for case-control association studies, Statistical Application in Genetics and Molecular Biology, Vol. 15(2), pages 151-171.

2015

  1. 17.A. Bar-Hen, M. Emily and N. Picard. (2015) Spatial Cluster Detection Using Nearest Neighbour Distance, Spatial Statistics, Vol. 14, pages 400-411.

< 2015

  1. 18.M. Emily, A. Talvas and C. Delamarche. (2013) MetAmyl: a METa-predictor for AMYLoid proteins, PLoS One; 8(11): e79722.

  2. 19.M. Emily (2012) IndOR: A new statistical procedure to test for SNP-SNP epistasis in Genome-Wide Association Studies, Statistics In Medicine, Vol. 31, No. 21, pages 2359-2373.

  3. • Supporting material here

  4. 20.M. Emily, T. Mailund, J. Hein, L. Schauser and M. H. Schierup. (2009) Using Biological Networks to Search for Interacting Loci, European Journal of Human Genetics, Vol. 17, pages 1231-1240.

  5. 21.M. Emily, P. Casez and O.Francois. (2009) Risk assessment for hospital-acquired infections and occupational diseases: a risk-theory approach, Risk Analysis, Vol. 29, No. 4, pages 565-575.

  6. 22.M. Emily and O.Francois. (2007) A statistical approach to estimating the strength of cell-cell interactions under the differential adhesion hypothesis, Theoretical Biology and Medical Modelling, Vol. 4:37.

  7. 23.M. Emily and O.Francois. (2006) Conditional coalescent trees with two mutation rates and their application to genomic instability, Genetics, Vol. 172, pages 1809-1820.

  8. 24.M. Emily, D. Morel, R. Marcelpoil and O.Francois. (2005) Spatial correlation of gene expression measures in Tissue Microarray core analysis, Journal of theoretical Medicine, Vol. 6, No. 1, pages 33-39.
    NB : La revue Computational & Mathematical Methods in Medicine a remplacée la revue Journal of theoretical Medicine.

Invited conferences

  1. •M. Emily, Analyzing (complex) systems with Structural Equation Modelling, NetBio, March 16, 2021.

  2. •M. Emily, Aggregation of dependent statistics in genome-wide association studies, Grenoble, February 13, 2020.

  3. •M. Emily, Exemples et perspectives de recherche en IA pour l’agriculture, Matinale du Poool «IA et agriculture», June 27, 2019.

  4. •M. Emily, Aggregation of dependent statistics in genome-wide association studies, Paris, June 24, 2019.

  5. •M. Emily Aggregation of dependent statistics in genome-wide association studies, Journées de la statistique à Rennes (JSTAR), Rennes, France, April 4-5, 2019.

  6. •M. Emily Epistasis in case-control (GW)AS : a signal detection approach, Toulouse, France, December 7, 2018.

  7. •M. Emily Gene-gene interaction in Genome Wide Association Studies, Toulouse, France, March 31, 2017.

  8. •M. Emily SMILE: a novel Dissimilarity-based Procedure for Detecting Sparse-Specific Profiles in SParse Contingency Tables, Evry, France, November 10, 2015.

  9. •M. Emily Theoretical and computational aspects of association tests: application to genome-wide association studies, November 18, 2014.

  10. •M. Emily Theoretical and computational aspects of association tests: application to genome-wide association studies, June 13, 2014.

  11. •M. Emily Théorie du risque en santé publique: Application aux infections en milieu hospitalier, 41ème Journées de Statistique, Bordeaux, France, May 25 - 29, 2009.

  12. •M. Emily Protein interaction networks and genome-wide association studies, Journées MAS de la SMAI - Modélisation et Statistiques des Réseaux Rennes France, August 27-29, 2008.

International conferences

  1. •S. Mira, M. Emily, C. Mougel and E. Le Cadre. Crop diversification positively alters the intensity of soil-plant interactions in intensive agrosystems, Rhizosphere 5, Saskatoon, Canada, July 2019

  2. •X. de Tinguy, C. Pacchierotti, M. Emily, M. Chevalier, A. Guignardat, M. Guillaudeux, C. Six, A. Lécuyer and M. Marchal How different tangible and virtual objects can be while still feeling the same?, WHC 2019 - IEEE World Haptics Conference, Jul 2019, Tokyo, Japan. pp.1-6.

  3. •S. Mira, C. Mougel, M. Emily and E. Le Cadre. Crop diversification positively alter the intensity of soil-plant interactions in intensive agrosystems giving clues for agroecological transition, SFEcologie, Rennes, Octobre 2018

  4. •A. Deglaire, F. Kroell, S. C. de Oliveira, J. Jardin, V. Briard-Bion, A. Bellanger, P. Pladys, M. Emily, O. Ménard, C. Bourlieu, D. Dupont. Impact of pasteurization of human milk on the kinetics of peptide release during gastric digestion in the preterm infant.

  5. •F. Hébert, M. Emily and D. Causeur. Block testing approach in genome-wide association studies using a multilevel modeling of the dependence structure. Statistical for (Post) Genomic Data (SMPGD’17), London, United Kingdom, January 12-13, 2017.

  6. •A. Le Faucheur, , P.-Y. de Müllenheim, M. Emily, S. Chaudru, J. Prioux, G. Mahé and B. Noury-Desvaux. Comparison of GPS, accelerometry and heart rate for estimating metabolic rate during level and uphill outdoor walking. Proceedings of 21th annual congress of the European College of Sport Science, Vienna, Austria, July 6-9, 2016.

  7. •P.-Y. de Müllenheim, S. Chaudru, M. Emily, M. Franconnet, R. Moreau, J. Prioux, G. Mahé and A. Le Faucheur. The relationship between walking capacity and previous stop duration in patients with peripheral artery disease. Proceedings of 21th annual congress of the European College of Sport Science, Vienna, Austria, July 6-9, 2016.

  8. •Y. Gaffary, M. Marchal, A. Girard, M. Pellan, A. Asselin, B. Peigne, M. Emily and A. Lécuyer. Studying one and two-finger perception for the discrimination of tactile directional cues, Proceedings of Eurohaptics, London, United Kingdom, July 4-7, 2016.

  9. •M. Emily, N. Sounac, F. Kroell and Magalie Houée-Bigot, Statistical methods for gene-based gene-gene interaction detection in R. Journées ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2016), Lyon, France June 28 - June 30, 2016.

  10. •M. Emily, N. Sounac and F. Kroell. Analyzing gene-based gene-gene interactions with R. European Mathematical Genetics Meeting EMGM, Newcastle, United Kingdom, May 11-12, 2016.

  11. •M. Emily. Impact of tagging on the statistical power of association tests in Genome-Wide Association Studies. European Mathematical Genetics Meeting EMGM, Brest, France, April 16-17, 2015.

  12. •M. Emily. and C. Friguet Biological marker selection for detecting gene-gene interaction in genome-wide association studies. 6th International Conference of the ERCIM WG on Computational and Methodological Statistics (ERCIM 2013), London, United Kingdom, Decembre 14-16 2013.

  13. •M. Emily. A case-only measure of SNP-SNP interaction in GWAS. European Mathematical Genetics Meeting EMGM, Leiden, The netherlands, April 25-26, 2013.

  14. •M. Emily and D. Causeur. Generalized linear factor modeling for dependence between SNPs in GWAS. Statisical for (Post) Genomic Data (SMPGD’13), Amsterdam, The netherlands, January 24-25, 2013.

  15. •A. Talvas, M. Marchal, C. Nicolas, G. Cirio, M. Emily, A. Lécuyer. Novel Interactive Techniques for Bimanual Manipulation of 3D Objects with Two 3DoF Haptic Interfaces. Proceedings of Eurohaptics , Tampere, Finland, June 12-15 2012 pp.552-563.

  16. •H. Jean-Baptiste-Adolphe, M. Emily, A. Vaysse, C. André, C. Hitte. Haplotype-based method for detecting regions under selection in domestic dog. Journées ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2012), INRIA, Rennes, France July 3 - July 7, 2012.

  17. •M. Emily, C. Schirmer, A. Jan, A. Talvas, C. Garnier and C. Delamarche. Prediction of amyloidogenic motifs in Human proteins. Journées ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2012), INRIA, Rennes, France July 3 - July 7, 2012.

  18. •A. Talvas, C. Delamarche and M. Emily. Meta-prediction of amyloidogenic fragments using logistic regression The 6th IAPR International Conference on Pattern Recognition in Bioinformatics, , Delft, The Netherlands, November 2-4, 2011.

  19. •M. Emily. SNP-SNP interaction in Association Studies. 2nd international BIO-SI Workshop on biostatistics, ENSAI, Bruz, France, October 6-7, 2011.

  20. •A. Talvas, C. Delamarche, M. Emily. Meta-prediction of amyloidogenic fragments using logistic regression. Journées ouvertes de Biologie, Informatique et Mathématiques (JOBIM 2011), Institut Paster, Paris, France Juin 30 - July 1, 2011.

  21. •L. Terziman, M. Marchal, M. Emily, F. Multon, B. Arnaldi, A. Lécuyer. Shake-Your-Head: Revisiting Walking-In-Place for Desktop Virtual Reality. Proceedings of 17th ACM Symposium on Virtual Reality Software and Technology (VRST 2010), pp 27-34, Hong Kong, November 22-24, 2010.

  22. •A. Le Bechec, A. Talvas, E. Rio, M. Emily, C. Garnier and C. Delamarche. A large scale comparison of predicted amyloigogenic regions using several published methods. Conference Jacques Monod, Roscoff, June 5-9, 2010.

  23. •M. Marchal, A. Lécuyer, G. Cirio, L. Bonnet and M. Emily. Walking Up and Down in Immersive Virtual Worlds: Novel Interactive Techniques Based on Visual Feedback. Proceedings of IEEE Symposium on 3D User Interface (3DUI'10), pp 19-26, Waltham, USA, March 20-21, 2010.

  24. •M. Emily, L. Schauser, T. Mailund and M. Schierup. Using Biological Networks to Search for Interacting SNPs in Genome-wide Association Studies, XX The International Congress of Genetics, Berlin, Allemagne, July 12-17 2008.

  25. •M. Emily, L. Schauser, T. Mailund and M. Schierup. Biological networks and epistasis in genome-wide association studies, The Genomics of Common Diseases, Hinxton - Wellcome Trust Genome Campus, Royaume-Uni, July 7-10, 2007.

  26. •M. Emily and O. Francois. Number of segregating sites in a sample of genes under the genetic instability hypothesis, XIth International Symposium on Applied Stochastic Models and Data Analysis, ASMDA 2005, Brest, France, May 17-20, 2005.

  27. •M. Emily and O. Francois. Estimating the raised mutation rate from a sample of genes with mutators, 33rd European Mathematical Genetics Meeting, EMGM 2005, Le Kremlin-Bicetre, Paris, April 1st-2nd 2005, pp.26. Résumé publié dans ANNALS OF HUMAN GENETICS Vol 69: page 767 Part 6 NOV 2005.

  28. •M. Emily, D. Morel, R. Marcelpoil, O.Francois. Spatial correlation of gene expression measures in Tissue Microarray core analysis, JOBIM'04, Page 50, Montreal Canada, June, 28-30 2004.

French Conferences

  1. •F. Hébert, M. Emily and D. Causeur. Prise en compte de la dépendance en classification supervisée. 51èmes Journées De Statistique . Nancy, France, 2019.

  2. •Magalie Houée-Bigot and M. Emily, Application d’approches de deep learning aux données de génomique, Workshop Deep Learning et Génomique, Versailles, 2018.

  3. •F. Hébert, M. Emily and D. Causeur. Combinaison de tests dépendants en études d'association pangénomiques, Journées des jeunes chercheurs en biométrie, Paris, 2018

  4. •F. Hébert, M. Emily and D. Causeur. Prise en compte de la dépendance en études d'association pangénomiques. 50èmes Journées De Statistique . Saclay, France, 2018.

  5. •F. Hébert, M. Emily and D. Causeur. Combination of dependent tests in genome-wide association studies. 49èmes Journées De Statistique . Avignon, France, 29 Mai - 2 Juin, 2017.

  6. •A. Deglaire, F. Kroell, S. de Oliveira, J. Jardin, V. Briard-Bion, M. Emily, A. Bellanger, P. Pladys, O. Ménard, C. Bourlieu and D. Dupont, Impact de la pasteurisation du lait maternel sur les cinétiques de libération des peptides au cours de la digestion gastrique chez le nouveau-né prématuré, Journées Fraçaises de Nutrition, Nantes, december 13-15, 2016.

  7. •M. Emily and A. Mom,  Détection de profils conditionnels dans des matrices creuses pour la sélection génomique., 47ème Journées de Statistique, Lille, France, June 1-5, 2015.

  8. •M. Emily and C. Friguet,  Etude de puissance pour la détection d'association directe et indirecte à partir de table de contingence 2x2, 46ème Journées de Statistique, Rennes, France, June 2-6, 2014.

  9. •C. Friguet and M. Emily, Sélection de marqueurs biologiques pour la détection d’interaction de gènes, 45ème Journées de Statistique, Toulouse, France, May, 27-31, 2013.

  10. •M. Emily and A. Bar-Hen, Spatial clustering using nearest-neighbour distance, 44ème Journées de Statistique, Bruxelles, Belgium, May, 21-25 2012.

  11. •L. Terziman, M. Marchal, M. Emily, F. Multon, B. Arnaldi, A. Lecuyer, A Novel Walking-In-Place Technique for Navigating in Virtual Worlds Using Head Motions, 5ème journées de l’AFRV (Association Française de Réalité Virtuelle, Augmentée, Mixte et d’Interaction 3d) , Université Paris-Sud (Orsay), December 6-8, 2010.

  12. •M. Emily Détection d'interaction de gènes à l'échelle du génome, 42ème Journées de Statistique, Marseille, France, May 24-28, 2010.

  13. •M. Emily and R. S. Stoica. Estimation Monte Carlo dans les processus ponctuels marqués en biologie tissulaire, 41ème Journées de Statistique, Bordeaux, France, May 25 - 29, 2009.

  14. •M. Emily and O.Francois. Estimating the raised mutation rate in a sample of gene with mutators, JOBIM'05, Poster 74, Lyon France, July 6-8, 2005.

  15. •M. Emily and O.Francois. Estimateur de pseudo-vraisemblance pour un processus ponctuel de Markov : application à l'histologie, 38ème Journée de Statistique Clamart France, May 29 - June 2, 2006.

Book Chapter

  1. •M. Marchal, A. Lécuyer, G. Cirio, L. Bonnet, M. Emily. Pseudo-haptic Walking. Chapter in: Walking with the Senses, eds. Y. Visell and F. Fontana. Logos Verlag (2012)


Thesis

  1. •M. Emily Contributions to biostatistics: categorical data analysis, data modeling and statistical inference, Habilitation à Diriger des Recherches, Université de Rennes 1, Novembre, 2016. HDR.pdf

  2. •M. Emily Modèles statistiques du développment de tumeurs cancéreuses, Thèse de doctorat en Mathématiques Appliquées de L'Institut National Polytechnique de Grenoble, September, 2006. Available here: https://tel.archives-ouvertes.fr/tel-00106972

Miscelleanous

  1. •M. Emily et O. Francois. Estimation d'un changement de taux de mutation dans un modèle coalescent d'une population de gènes, Premières Rencontres des Jeunes Statisticiens, Aussois, France, August 29 - Septembre 2, 2005.

  2. •M. Emily Détecter plus tôt le cancer? Le mensuel de l'université, February, 2007.