Mathieu EMILY

Articles under submission/revision

R. Mettauer, M. Emily, Z. Bednar-Konskic, A. Widmer, O. Godinota, L. Beulec, E. Le Cadre Spatial patterns of causality in temperate silvopastoral systems: a perspective on nitrification stability in response to flooding.
E. Le Cadre, X. Tang, M. Emily, Choreographing rhizosphere effect with agricultural practices for agroecology ?.
M. Perrignon, T. Croguennec, R. Jeantet and M. Emily, The multi-objective data-driven approach: a route to drive performance optimization in the food industry.
M. Perrignon, T. Croguennec, R. Jeantet and M. Emily, Machine Learning for the prediction of dry matter in Emmental.
M. Emily, S. Mira, S. Guichard, E. Le Cadre, Latent Structural Equation Modeling to explore causal space of above-belowground terrestrial ecosystems: a roadmap

Articles in international journals

F. Hébert, D. Causeur and M. Emily (2023) Adaptive Handling of Dependence in High-Dimensional Regression Modeling, Journal of Computational and Graphical Statistics , Vol. 32, pages 213-225.
M. Sassi, J. Bronsard, G. Pascreau, M. Emily, P.-Y. Donnio, M. Revest, B. Felden, T. Wirth, Y. Augagneur (2022) Forecasting Staphylococcus aureus Infections Using Genome-Wide Association Studies, Machine Learning, and Transcriptomic Approaches, mSystems Vol. 7, No. 4.
F. Hébert, D, Causeur and M. Emily (2022) Omnibus testing approach for gene-based gene-gene interaction, Statistics in Medicine . Vol. 41, No. 15, pages 2854- 2878.
S. Mira, M. Emily, C. Mougel, M. Ourry and E. Le Cadre (2022) A field indicator for rhizosphere effect monitoring in arable soils, Plant and Soil Vol. 478, pages 325–346
P.-Y. de Mullenheim, L. Rouvière, M. Emily, S. Chaudru, A. Kaladji, G. Mahé, A. Le Faucheur, (2021) Should I stay or should I go now?" Recovery time effect on walking capacity in symptomatic peripheral artery disease, Journal of Applied Physiology Vol. 131, No. 1, pages 207-219.
G. Ménard, A. Rouillon, G. Ghukasyan, M. Emily, B. Felden, P.-Y. Donnio, (2021) Galleria mellonella larvae as a robust infection model to investigate sRNA-mediated pathogenesis in Staphylococcus aureus, Frontiers in cellular and infection microbiology VoL. 11.
A. Taoum, S. Chaudru, P.-Y. de Müllenheim, F. Congnard, M. Emily, B. Noury-Desvaux, S. Bickert, G. Carrault, G. Mahé, A. Le Faucheur, (2021) Comparison of activity monitors accuracy to assess intermittent outdoor walking, Medicine and Science in Sports and Exercise Vol. 53, No. 6, pages 303-1314.
F. Hébert, D. Causeur and M. Emily (2021), An adaptive decorrelation procedure for signal detection, Computational Statistics & Data Analysis, Vol. 153.
M. Emily, N. Sounac, F. Kroell and M. Houée-Bigot (2020), Gene-based methods to detect gene-gene interaction in R: the GeneGeneInteR package, Journal of Statistical Software, Vol. 95, No. 12, pages 1-32.
A. Deglaire, S. De Oliveira, J. Jardin, V. Briard-Bion, F. Kroell, M. Emily, O. Ménarda, C. Bourlieu, D. Dupont (2019) Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic digestion at the preterm newborn stage, Food Chemistry , Vol. 281, pages 294-303.
M Emily and C. Friguet (2018) A Mutual Information-based method to select informative pairs of variables in case-control genetic association studies to improve the power of detecting interaction between genetic variants, Journal de la Société Française de Statistique, Vol. 159, No. 2, pages 84-110.
M. Emily (2018) A survey of statistical methods for gene-gene interaction in case-control genome-wide association studies, Journal de la Société Française de Statistique , Vol. 159, No. 1, pages 27-67.
Y. Gaffary, F. Argelaguet Sanz, M. Marchal, A. Girard, F. Gosselin, M. Emily, A. Lécuyer (2018) Toward Haptic Communication: Tactile Alphabets Based on Fingertip Skin Stretch, IEEE Transactions on Haptics , Vol. 11, No. 4, pages 636-645.
P.-Y. de Müllenheim, S. Chaudru, M. Emily, M. Gernigon, G. Mahé, S. Bickert, J. Prioux, B. Noury-Desvaux and A. Le Faucheur (2018), Using GPS, accelerometry and heart rate to predict outdoor graded walking energy expenditure, Journal of Science and Medicine in Sport, Vol. 21, No. 2, pages 166-172.
M. Emily (2018), Power comparison of Cochran-Armitage Test of Trend against allelic and genotypic tests in case-control genetic association studies, Statistical Methods in Medical Research, Vol. 27, No. 9, pages 2657-2673.
M. Emily and C. Friguet. (2017) Power evaluation of asymptotic tests for comparing two binomial proportions to detect direct and indirect association in large-scale studies, Statistical Methods in Medical Research, Vol. 26, No. 6, pages 2780-2799.
A. Deglaire, S. de Oliveira, J. Jardin, V. Briard-Bion, M. Emily, O. Ménard, C. Bourlieu and D. Dupont (2016) Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic term newborn digestion, Electrophoresis, Vol. 26(6), pages 1839-1850.
M. Emily, C. Hitte and A. Mom (2016) SMILE: a novel Dissimilarity-based Procedure for Detecting Sparse-Specific Profiles in Sparse Contingency Tables, Computational Statistics and Data Analysis, Vol. 99, pages 171-188.
M. Emily (2016) AGGrEGATOr: A Gene-based GEne-Gene interActTiOn test for case-control association studies, Statistical Application in Genetics and Molecular Biology, Vol. 15(2), pages 151-171.
A. Bar-Hen, M. Emily and N. Picard. (2015) Spatial Cluster Detection Using Nearest Neighbour Distance, Spatial Statistics, Vol. 14, pages 400-411.
M. Emily, A. Talvas and C. Delamarche. (2013) MetAmyl: a METa-predictor for AMYLoid proteins, PLoS One; 8(11): e79722.
M. Emily (2012) IndOR: A new statistical procedure to test for SNP-SNP epistasis in Genome-Wide Association Studies, Statistics In Medicine, Vol. 31, No. 21, pages 2359-2373.
M. Emily, T. Mailund, J. Hein, L. Schauser and M. H. Schierup. (2009) Using Biological Networks to Search for Interacting Loci, European Journal of Human Genetics, Vol. 17, pages 1231-1240.
M. Emily, P. Casez and O.Francois. (2009) Risk assessment for hospital-acquired infections and occupational diseases: a risk-theory approach, Risk Analysis, Vol. 29, No. 4, pages 565-575.
M. Emily and O.Francois. (2007) A statistical approach to estimating the strength of cell-cell interactions under the differential adhesion hypothesis, Theoretical Biology and Medical Modelling, Vol. 4:37.
M. Emily and O.Francois. (2006) Conditional coalescent trees with two mutation rates and their application to genomic instability, Genetics, Vol. 172, pages 1809-1820.
M. Emily, D. Morel, R. Marcelpoil and O.Francois. (2005) Spatial correlation of gene expression measures in Tissue Microarray core analysis, Journal of theoretical Medicine, Vol. 6, No. 1, pages 33-39.

Thesis

M. Emily Contributions to biostatistics: categorical data analysis, data modeling and statistical inference, Habilitation à Diriger des Recherches, Université de Rennes 1, Novembre, 2016. Available here: HDR.pdf
M. Emily Modèles statistiques du développment de tumeurs cancéreuses, Thèse de doctorat en Mathématiques Appliquées de L'Institut National Polytechnique de Grenoble, September, 2006. Available here: https://tel.archives-ouvertes.fr/tel-00106972

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